Cell Cycle Ontology

Protégé. Protégé is a free and open source ontology editor for OWL, frames and RDF(S). Protégé 4 alpha is a new version exclusively focused in OWL.

OWL API. The OWL API is a java API for OWL. It includes OWL 1.1 support and native integration with the reasoners Pellet and FaCT++.

Cytoscape. Cytoscape is a visualizing tools for molecular networks and integration with data like gene expression profiles.

VisAnt. VisANT is a pathway visualization tool.

OBO-Edit. OBO-Edit is an ontology editor for the OBO format.